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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18940809_18941210_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18940809 - 18941210
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATTCCTTGATT
Flanking Amino Acid:
IQSIRGNHAAELRVDVDQPA
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.5
0.57
0.9
69
36.1
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
77.5
0.95
1.1
83.82
37.4

Associated Gene:

Gene:
ZCCHC14
Ensembl Gene ID:
ENSAPLG00000005595
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005794
18937277 - 18985302
48026