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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18944933_18946039_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18944933 - 18946039
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATGT
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCAAT
U12 Branch Point Sequence:
ATGTGCTAAATC
Flanking Amino Acid:
KVGTTLGTSGRPVCGVAGIQ
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
70.9
35.5
Major BPS
68.1
0.45
1.3
76.8
34.3
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
33.6
-1.9
3.2
47.6
47.9
Minor BPS
50.4
-0
2.1
64.06
42.3

Associated Gene:

Gene:
ZCCHC14
Ensembl Gene ID:
ENSAPLG00000005595
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005794
18937277 - 18985302
48026