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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18946095_18946187_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18946095 - 18946187
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
SSPSQQLQSSNPGNPSLYKV
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.5
0.71
0.8
80.2
31.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
ZCCHC14
Ensembl Gene ID:
ENSAPLG00000005595
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005794
18937277 - 18985302
48026