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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18948284_18951044_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18948284 - 18951044
Intron Length:
2761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTC
Flanking Amino Acid:
NERNVEYSFEVLWSDSSVTL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.9
0.74
0.8
74.2
36.4
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
67
0.51
1.5
77
33.7

Associated Gene:

Gene:
ZCCHC14
Ensembl Gene ID:
ENSAPLG00000005595
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005794
18937277 - 18985302
48026