Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18963049_18971999_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18963049 - 18971999

Intron Length:

8951

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTCCT

5'SS Class:

strong_major

3'SS Sequence:

AATCGCTGGTCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGAAT

U12 Branch Point Sequence:

TGTCTTTGAATC

Flanking Amino Acid:

PKRPSGKHSKDPVWDPK*

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

73.2

37.5

Major BPS

74.6

0.61

1.4

34.5

Major PPT

56.9

0.16

1.1

54.7

44.9

Minor 5ss

37.5

-1.4

2.9

50.7

45.7

Minor BPS

56.5

0.18

1.4

64.98

34.3

Associated Gene:

Gene:

ZCCHC14

Ensembl Gene ID:

ENSAPLG00000005595

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045351

18962065 - 18985302

23238