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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18969831_18971999_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18969831 - 18971999
Intron Length:
2169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTCCT
5'SS Class:
strong_major
3'SS Sequence:
AACTGCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TTTTCCCTAATC
Flanking Amino Acid:
PKRPSGKHSKGSSISSFAMG
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
73.2
37.5
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
67.5
0.4
0.9
63
38.6
Minor 5ss
37.5
-1.4
2.9
50.7
45.7
Minor BPS
77.1
0.83
1.6
87.3
29.2

Associated Gene:

Gene:
ZCCHC14
Ensembl Gene ID:
ENSAPLG00000005595
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035446
18968048 - 18985302
17255