About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18980586_18984282_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18980586 - 18984282
Intron Length:
3697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
CTTTACACAACC
Flanking Amino Acid:
AVATYPGCHKIMITRTCLDS
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
72.8
0.57
1
81
30.3
Major PPT
82
0.72
0.8
77.2
31.5
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
49.9
-0
2
68.97
42

Associated Gene:

Gene:
ZCCHC14
Ensembl Gene ID:
ENSAPLG00000005595
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022665
18980532 - 18985302
4771