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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19005866_19056489_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19005866 - 19056489
Intron Length:
50624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGGGCTGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCGGCAT
U12 Branch Point Sequence:
TTGGGCTGGAAG
Flanking Amino Acid:
SSEEESEDEEGERQQKAHGG
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
41.9
-0.5
1.5
45
47.8
Major PPT
52
0.05
1.2
52.2
41.9
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
41.7
-0.8
2.1
47.94
45.5

Associated Gene:

Gene:
KLHDC4
Ensembl Gene ID:
ENSAPLG00000006655
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006944
19005456 - 19081262
75807
ENSAPLT00000017685
19005456 - 19081262
75807