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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19007368_19020489_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19007368 - 19020489
Intron Length:
13122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAA
U12 Branch Point Sequence:
TTTCCTTTCGCC
Flanking Amino Acid:
GYGTETYSDGGTYQGQWVGG
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
50.5
0.01
1.1
43.3
37.8
Major PPT
77.4
0.62
0.7
72.3
25.8
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
43.7
-0.5
3.5
71.59
39.8

Associated Gene:

Gene:
JPH3
Ensembl Gene ID:
ENSAPLG00000006426
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006652
19006757 - 19049423
42667