Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19037540_19041026_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19037540 - 19041026

Intron Length:

3487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTCAGTGCA

5'SS Class:

major

3'SS Sequence:

CTCCCCGAAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCCCAA

U12 Branch Point Sequence:

TTTCCCCCAACT

Flanking Amino Acid:

FSPSFQHRENGLECQRPKRQ

Intron Amino Acid Position:

429

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.3

66.3

39.6

Major BPS

45.3

-0.2

1.2

35.2

Major PPT

49.1

-0

1.1

48.6

32.1

Minor 5ss

28.9

-2.4

2.9

34.3

41.1

Minor BPS

63.3

0.5

1.9

87.27

37.5

Associated Gene:

Gene:

JPH3

Ensembl Gene ID:

ENSAPLG00000006426

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029302

18983943 - 19049423

65481

ENSAPLT00000006652

19006757 - 19049423

42667