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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19053_20601_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19053 - 20601
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATTTCGA
5'SS Class:
major
3'SS Sequence:
CTTATGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTGCCTTCAATA
Flanking Amino Acid:
KTPKIEDNQWSSHRVSEEGN
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
54.4
44.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
76.6
0.6
1
72.7
42.2
Minor 5ss
39.3
-1.2
2.7
41.7
44.7
Minor BPS
60.2
0.32
1.5
68.87
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640