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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19056607_19057308_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19056607 - 19057308
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAAACAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTTCTAAACA
Flanking Amino Acid:
EWKVLVEMDPKAQEWLEESE
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.2
35.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
60.8
0.24
1.1
61.5
37.3
Minor 5ss
48.2
-0.2
2.8
66.3
38.7
Minor BPS
70
0.62
1.6
78.35
38.8

Associated Gene:

Gene:
KLHDC4
Ensembl Gene ID:
ENSAPLG00000006655
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029834
19055630 - 19081262
25633
ENSAPLT00000017685
19005456 - 19081262
75807
ENSAPLT00000006944
19005456 - 19081262
75807