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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19059059_19061098_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19059059 - 19061098
Intron Length:
2040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TATCTGTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATCT
Flanking Amino Acid:
LKAEGSGKEEEKWAWSRLNP
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.8
0.53
1
66.5
43.7
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
67.8
0.64
1.5
82.83
39.1

Associated Gene:

Gene:
KLHDC4
Ensembl Gene ID:
ENSAPLG00000006655
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029834
19055630 - 19081262
25633
ENSAPLT00000017685
19005456 - 19081262
75807
ENSAPLT00000006944
19005456 - 19081262
75807