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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19061181_19067312_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19061181 - 19067312
Intron Length:
6132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
CCCTTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTTGCTGAACG
Flanking Amino Acid:
VIIYGGYSKQRIKKDVDKGT
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
79
0.65
0.7
72.8
25.4
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
65.5
0.35
2
76.42
41

Associated Gene:

Gene:
KLHDC4
Ensembl Gene ID:
ENSAPLG00000006655
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029834
19055630 - 19081262
25633
ENSAPLT00000017685
19005456 - 19081262
75807
ENSAPLT00000006944
19005456 - 19081262
75807