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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19079194_19080091_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19079194 - 19080091
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTAACATCTACT
Flanking Amino Acid:
IETACPPPSPRLNGSLSAHP
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
47.2
-0.1
2.2
71.85
44

Associated Gene:

Gene:
KLHDC4
Ensembl Gene ID:
ENSAPLG00000006655
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006944
19005456 - 19081262
75807
ENSAPLT00000029834
19055630 - 19081262
25633
ENSAPLT00000017685
19005456 - 19081262
75807