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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19101681_19103563_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19101681 - 19103563
Intron Length:
1883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTCTCCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
ACCTCTTTGACC
Flanking Amino Acid:
NKPKWVLQGIFHATAVCQKL
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
78.8
0.65
0.7
73.5
24.7
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
67.6
0.54
1.2
67.29
39

Associated Gene:

Gene:
SLC7A5
Ensembl Gene ID:
ENSAPLG00000029758
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027293
19099134 - 19136315
37182