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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19103742_19105054_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19103742 - 19105054
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AAGTTCTTACCT
Flanking Amino Acid:
KKPELERPIKVNVCLPIFFI
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
85.8
0.81
0.7
84.8
30
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
63.1
0.49
1.6
74.97
41.8

Associated Gene:

Gene:
SLC7A5
Ensembl Gene ID:
ENSAPLG00000029758
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027293
19099134 - 19136315
37182