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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19105628_19106406_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19105628 - 19106406
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACTACTT
5'SS Class:
major
3'SS Sequence:
TCCCTCACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
TCTCCCTCACCT
Flanking Amino Acid:
SVNGSLFTSSRLFFVGSREG
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.1
59.8
44.7
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
72.6
0.51
0.8
69.8
29.4
Minor 5ss
37.4
-1.4
3.5
57.6
46.5
Minor BPS
57.9
0.33
1.9
77.75
44.4

Associated Gene:

Gene:
SLC7A5
Ensembl Gene ID:
ENSAPLG00000029758
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027293
19099134 - 19136315
37182