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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19106511_19107627_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19106511 - 19107627
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TGTGACGGGACT
Flanking Amino Acid:
QMLASEAVAVDFGNYHLGVM
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.4
36.3
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
70.1
0.45
0.9
68.5
31.8
Minor 5ss
37.4
-1.4
3
44.2
44.6
Minor BPS
42.7
-0.4
2.3
65.7
44.6

Associated Gene:

Gene:
SLC7A5
Ensembl Gene ID:
ENSAPLG00000029758
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027293
19099134 - 19136315
37182