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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19110101_19122436_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19110101 - 19122436
Intron Length:
12336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
IILGFVQLARGDVTSLTPEH
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.4
40.3
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
89.2
0.88
0.6
84.8
22.9
Minor 5ss
30.2
-2.3
2.5
26.6
35.9
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
SLC7A5
Ensembl Gene ID:
ENSAPLG00000029758
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027293
19099134 - 19136315
37182