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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19122563_19134855_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19122563 - 19134855
Intron Length:
12293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CCATTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTCTTGTCCATT
Flanking Amino Acid:
AAKLVACLCVLLLTAVNCYS
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.4
44
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
82.9
0.74
0.8
80.5
31.3
Minor 5ss
37.9
-1.4
2.7
50.5
39.2
Minor BPS
43
-0.4
2.5
66.82
44.9

Associated Gene:

Gene:
SLC7A5
Ensembl Gene ID:
ENSAPLG00000029758
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027293
19099134 - 19136315
37182