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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19149096_19152369_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19149096 - 19152369
Intron Length:
3274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATATTTATTA
Flanking Amino Acid:
VEFDDSTDRSIIVGGPLENQ
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
49.8
-0
1.7
60.61
40

Associated Gene:

Gene:
CA5B
Ensembl Gene ID:
ENSAPLG00000007542
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019801
19142172 - 19161707
19536
ENSAPLT00000007835
19143172 - 19154183
11012