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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19185569_19203916_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19185569 - 19203916
Intron Length:
18348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCCTCTCTGATT
Flanking Amino Acid:
GATQTCNKVRCVVPQTTVIL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
54.9
0.23
1.7
70.95
41

Associated Gene:

Gene:
BANP
Ensembl Gene ID:
ENSAPLG00000007452
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048432
19182426 - 19314416
131991
ENSAPLT00000027115
19182426 - 19314416
131991
ENSAPLT00000007763
19182426 - 19314680
132255