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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19204037_19204975_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19204037 - 19204975
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTTTTTATTT
Flanking Amino Acid:
RATDSLDILSNAVPGRRQNT
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
85.8
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.6
84.5
23.5
Minor 5ss
39.7
-1.2
2.8
53.7
36.8
Minor BPS
59.7
0.38
1.5
72.97
39.1

Associated Gene:

Gene:
BANP
Ensembl Gene ID:
ENSAPLG00000007452
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048432
19182426 - 19314416
131991
ENSAPLT00000027115
19182426 - 19314416
131991
ENSAPLT00000007763
19182426 - 19314680
132255