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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19205152_19217066_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19205152 - 19217066
Intron Length:
11915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGAAT
U12 Branch Point Sequence:
ATTTCCACAATC
Flanking Amino Acid:
NVTLITLNSEEDYPNGTWLG
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
62.9
0.32
1.5
72.3
40.4
Major PPT
80.3
0.68
0.8
72.8
37.5
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
60.1
0.3
1.8
74.46
35.8

Associated Gene:

Gene:
BANP
Ensembl Gene ID:
ENSAPLG00000007452
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048432
19182426 - 19314416
131991
ENSAPLT00000027115
19182426 - 19314416
131991
ENSAPLT00000007763
19182426 - 19314680
132255