Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19217307_19233800_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19217307 - 19233800

Intron Length:

16494

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTATA

5'SS Class:

major

3'SS Sequence:

TCTCTAATTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

TTCTCTCTAATT

Flanking Amino Acid:

LDPLMIYGIRCHLFYKFGIT

Intron Amino Acid Position:

301

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

1.1

76.5

Major BPS

82.2

0.8

0.9

81.6

Major PPT

0.59

0.8

70.1

34.1

Minor 5ss

36.8

-1.5

2.9

52.2

44.4

Minor BPS

68.1

0.65

1.6

84.17

37.2

Associated Gene:

Gene:

BANP

Ensembl Gene ID:

ENSAPLG00000007452

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007763

19182426 - 19314680

132255

ENSAPLT00000048432

19182426 - 19314416

131991

ENSAPLT00000027115

19182426 - 19314416

131991