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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19233969_19243377_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19233969 - 19243377
Intron Length:
9409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GCAAATCTAATA
Flanking Amino Acid:
TPSSSSYGGSEGSQSAVSAS
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87.1
0.83
0.7
85.1
29.7
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
43.3
-0.5
1.7
47.43
36.1

Associated Gene:

Gene:
BANP
Ensembl Gene ID:
ENSAPLG00000007452
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048432
19182426 - 19314416
131991
ENSAPLT00000027115
19182426 - 19314416
131991
ENSAPLT00000007763
19182426 - 19314680
132255