Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19243509_19245645_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19243509 - 19245645

Intron Length:

2137

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

GTA|GTATGTACT

5'SS Class:

major

3'SS Sequence:

TTTTTTGTTGTGG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTCTTCTGATGC

Flanking Amino Acid:

QIGEDGQVQVIPQGHLHIAQ

Intron Amino Acid Position:

401

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

72.6

36.3

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

47.1

-0.1

3.2

77.2

37.1

Minor 5ss

46.3

-0.4

2.5

62.6

36.5

Minor BPS

47.8

-0.1

62.26

43.5

Associated Gene:

Gene:

BANP

Ensembl Gene ID:

ENSAPLG00000007452

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007763

19182426 - 19314680

132255

ENSAPLT00000048432

19182426 - 19314416

131991

ENSAPLT00000027115

19182426 - 19314416

131991