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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19245718_19247596_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19245718 - 19247596
Intron Length:
1879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTATTTTACA
Flanking Amino Acid:
EQVQITQDSEGNLQIHQVHV
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
70.2
37.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.9
0.87
0.7
83.5
31.2
Minor 5ss
31.7
-2.1
3
37.9
46.9
Minor BPS
58.9
0.27
1.8
71.98
40

Associated Gene:

Gene:
BANP
Ensembl Gene ID:
ENSAPLG00000007452
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048432
19182426 - 19314416
131991
ENSAPLT00000027115
19182426 - 19314416
131991
ENSAPLT00000007763
19182426 - 19314680
132255