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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19309971_19310466_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19309971 - 19310466
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
CCCTTTCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAA
Flanking Amino Acid:
PVTDHSATSQQFSSYFDPQP
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.8
0.56
0.9
71.2
33.3
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
69.4
0.6
1.3
77.65
32.3

Associated Gene:

Gene:
BANP
Ensembl Gene ID:
ENSAPLG00000007452
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027115
19182426 - 19314416
131991