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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19310530_19314344_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19310530 - 19314344
Intron Length:
3815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTCCTGATCT
Flanking Amino Acid:
FPTGAAMFAIGADTLQSAIQ
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.4
32.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
34.6
-1.8
3.3
45.9
43.7
Minor BPS
69.3
0.68
1.7
87.75
37.2

Associated Gene:

Gene:
BANP
Ensembl Gene ID:
ENSAPLG00000007452
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027115
19182426 - 19314416
131991