About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19319245_19320631_F

Intron Information:

Intron Rank:
150740
Intron Class:
major
Intron Phase:
Intron Coordinates:
19319245 - 19320631
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTAAT
5'SS Class:
major
3'SS Sequence:
TCCATTCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTCCATTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
74.3
35.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
74
0.54
0.9
65.7
40
Minor 5ss
43.7
-0.7
2.6
56.6
43
Minor BPS
54.9
0.14
2
73.1
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030986
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041894
19319188 - 19321600
2413