Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19567754_19570593_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19567754 - 19570593

Intron Length:

2840

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGCAGCCC

5'SS Class:

weak_major

3'SS Sequence:

CCCTCGGTGCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGGGAT

U12 Branch Point Sequence:

TCAGGATGGAGT

Flanking Amino Acid:

ARGFGRASKLGLADVGFLSA

Intron Amino Acid Position:

213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.3

0.15

1.1

43.6

37.7

Major BPS

56.3

0.16

1.6

57.1

49.4

Major PPT

56.2

0.14

39.3

Minor 5ss

-2.9

3.3

30.4

37.8

Minor BPS

35.5

-1

2.2

49.17

44.2

Associated Gene:

Gene:

ZFPM1

Ensembl Gene ID:

ENSAPLG00000025216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030647

19567118 - 19576919

9802