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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19597973_19601123_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19597973 - 19601123
Intron Length:
3151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCTTTCTAACCT
Flanking Amino Acid:
YRITRDVRDPALDPYADPYY
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.4
58
42.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.4
0.89
0.6
85.7
21.4
Minor 5ss
32.6
-2
3.3
38.7
39.6
Minor BPS
50.9
0.11
2
70.32
47.1

Associated Gene:

Gene:
ZC3H18
Ensembl Gene ID:
ENSAPLG00000007302
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007597
19590820 - 19624794
33975