Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19622313_19624180_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19622313 - 19624180

Intron Length:

1868

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGACAT

5'SS Class:

strong_major

3'SS Sequence:

TATTTTCCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TCACCTTTTATT

Flanking Amino Acid:

AKRANLSPDRGSRDRKAAGR

Intron Amino Acid Position:

894

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.8

76.8

33.7

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

82.8

0.74

0.7

78.5

29.9

Minor 5ss

28.2

-2.5

3.1

38.3

46.6

Minor BPS

55.7

0.26

1.6

69.73

41.4

Associated Gene:

Gene:

ZC3H18

Ensembl Gene ID:

ENSAPLG00000007302

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023632

19590820 - 19624794

33975

ENSAPLT00000007597

19590820 - 19624794

33975