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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19652058_19652174_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19652058 - 19652174
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
TCCCTTCGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
AAAATCCCATCC
Flanking Amino Acid:
TVITPPLSTKRREKTSIHRL
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.8
42.3
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
71.5
0.48
0.9
64.4
36.6
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
39
-0.8
1.8
44.88
36.1

Associated Gene:

Gene:
CTU2
Ensembl Gene ID:
ENSAPLG00000007265
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023904
19650026 - 19652438
2413
ENSAPLT00000007531
19650011 - 19652442
2432