About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19654163_19654306_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19654163 - 19654306
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCAGCCCC
5'SS Class:
major
3'SS Sequence:
CGTCCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GGATCCTCACCC
Flanking Amino Acid:
ILPMVIFNDKDHGAVRLHRA
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.3
54.9
40.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
76.5
0.6
0.8
69.2
31.3
Minor 5ss
36.3
-1.6
3
44.7
36.5
Minor BPS
51
0.01
1.9
61.59
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018541
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017892
19653776 - 19659783
6008