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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19654584_19654727_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19654584 - 19654727
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
AACGGCCCCGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TCTTCCCCAAAT
Flanking Amino Acid:
QLLQGTRDAPVQPGQADSYL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.7
36.5
Major BPS
66.1
0.4
1
73
31.5
Major PPT
48.1
-0.1
1
42
32.5
Minor 5ss
33.8
-1.8
3.4
44.3
43.6
Minor BPS
55.2
0.24
2
78.67
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018541
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017892
19653776 - 19659783
6008