About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19697494_19707268_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19697494 - 19707268
Intron Length:
9775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCACGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
ACTTCCATCATT
Flanking Amino Acid:
GRDPGEKYPLSFASEEYQGV
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
68.2
0.41
1
58.5
42.7
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
54
0.21
2
75.02
42.1

Associated Gene:

Gene:
GALNS
Ensembl Gene ID:
ENSAPLG00000014112
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038247
19694117 - 19736012
41896