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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19705587_19707268_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19705587 - 19707268
Intron Length:
1682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
AGTAAATGAATC
Flanking Amino Acid:
GRDPGEKYPLSTLCCYCLLS
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
88.4
0.86
0.6
84.2
23.7
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
44.5
-0.4
1.8
54.25
36.5

Associated Gene:

Gene:
GALNS
Ensembl Gene ID:
ENSAPLG00000014112
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014708
19705457 - 19736012
30556