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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19707391_19715587_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19707391 - 19715587
Intron Length:
8197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGGG
5'SS Class:
major
3'SS Sequence:
CTCTTCACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTCCTCTTCACT
Flanking Amino Acid:
WSNSWEEYSKGIDFCPGQNV
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
60.8
44.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
79.8
0.67
0.8
73.9
29.5
Minor 5ss
35.4
-1.7
3.4
47.6
47.9
Minor BPS
56.6
0.29
1.8
72.32
44.9

Associated Gene:

Gene:
GALNS
Ensembl Gene ID:
ENSAPLG00000014112
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038247
19694117 - 19736012
41896
ENSAPLT00000014708
19705457 - 19736012
30556