About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19732655_19733862_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19732655 - 19733862
Intron Length:
1208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
AAAAAAAAAAAT
Flanking Amino Acid:
FYTANPLCSPSRAALLTGRL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
54
0.1
1
59.7
32.6
Major PPT
81.5
0.71
0.9
77.2
37.1
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
34
-1.1
1.9
46.69
37.2

Associated Gene:

Gene:
GALNS
Ensembl Gene ID:
ENSAPLG00000014112
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038247
19694117 - 19736012
41896
ENSAPLT00000014708
19705457 - 19736012
30556