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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19736134_19737256_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19736134 - 19737256
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGTG
5'SS Class:
major
3'SS Sequence:
TCATCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTGTCCTCACGA
Flanking Amino Acid:
AVCVAVIAKENYPLYIRSVP
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.9
42.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
75.9
0.58
0.8
73.4
31.2
Minor 5ss
26
-2.8
3.7
36.3
48.1
Minor BPS
46.7
-0.2
2.1
58.89
46.9

Associated Gene:

Gene:
TRAPPC2L
Ensembl Gene ID:
ENSAPLG00000014015
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014591
19735875 - 19739510
3636