About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19737430_19738386_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
19737430 - 19738386
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATCTTTA
5'SS Class:
minor
3'SS Sequence:
AACAGCTGCCCAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CGGTCCTTAACA
Flanking Amino Acid:
GLLYPTEDYKVYGYVTNSKV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.3
60.6
40.8
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
53.5
0.08
1
42.7
42.3
Minor 5ss
75.8
0.87
1.6
75.5
40.6
Minor BPS
77.7
0.87
1.2
76.05
41.3

Associated Gene:

Gene:
TRAPPC2L
Ensembl Gene ID:
ENSAPLG00000014015
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014591
19735875 - 19739510
3636