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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19738675_19739311_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19738675 - 19739311
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTTCCTCTAACA
Flanking Amino Acid:
FYNPGDRIHSRAFDNMVNSM
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
61.9
0.37
1.7
73.45
38.3

Associated Gene:

Gene:
TRAPPC2L
Ensembl Gene ID:
ENSAPLG00000014015
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014591
19735875 - 19739510
3636