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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19742594_19742811_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19742594 - 19742811
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGACAC
U12 Branch Point Sequence:
TGCTCCAGGACA
Flanking Amino Acid:
QQARLRGRMYRGRARLLPWY
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
43.6
-0.4
1.1
44.2
38.7
Major PPT
73.3
0.53
0.9
66.2
40.8
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
50.8
0.02
1.8
65.33
40.6

Associated Gene:

Gene:
PABPN1L
Ensembl Gene ID:
ENSAPLG00000009174
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009542
19742503 - 19745527
3025