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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19784673_19786051_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19784673 - 19786051
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
CCTGCCCTGACA
Flanking Amino Acid:
LSTHENVQAVTTGLVEKWEW
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
52
0.05
1.8
62.79
43.7

Associated Gene:

Gene:
ACSF3
Ensembl Gene ID:
ENSAPLG00000003332
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003397
19780360 - 19821657
41298