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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19801374_19811425_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19801374 - 19811425
Intron Length:
10052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGCTC
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
ATTCCCTCACAT
Flanking Amino Acid:
HAQGDENGTQVTPGFEGQEG
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
60.6
44.2
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
81.5
0.71
0.9
76.2
37.8
Minor 5ss
34
-1.8
3.7
50.1
46.5
Minor BPS
50.3
0.09
1.9
73.98
42.1

Associated Gene:

Gene:
ACSF3
Ensembl Gene ID:
ENSAPLG00000003332
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003397
19780360 - 19821657
41298