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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19853200_19853673_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19853200 - 19853673
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
DVDDKYDRMKTCLLMRQQHE
Intron Amino Acid Position:
2654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.7
0.56
0.9
66.2
34.8
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
ANKRD11
Ensembl Gene ID:
ENSAPLG00000019829
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031423
19851918 - 19946771
94854