About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_19853767_19854817_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19853767 - 19854817
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCCCTTTTGATG
Flanking Amino Acid:
EVYNMPLENQGDENKSVRDR
Intron Amino Acid Position:
2623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.9
0.45
0.9
69.2
37
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
49.7
-0.1
1.3
50.22
39

Associated Gene:

Gene:
ANKRD11
Ensembl Gene ID:
ENSAPLG00000019829
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031423
19851918 - 19946771
94854